yxjI [2019-08-12 13:34:58]

unknown

locus: BSU_38940

pI: 4.47

mw: 18.68 kDa

protein length: 162 aa

gene length: 489 bp

function: unknown

product: unknown

essential: no

synonyms

Genomic Context

categories

• [category|SW 4|Lifestyles] → [category|SW 4.3|Coping with stress] → [category|SW 4.3.1|General stress proteins (controlled by SigB)]
• [category|SW 4|Lifestyles] → [category|SW 4.3|Coping with stress] → [category|SW 4.3.2|Cell envelope stress proteins (controlled by SigM, V, W, X, Y)]

Gene

Coordinates: 3,997,221 3,997,709

The protein

Protein family

• UPF0706 family (according to Swiss-Prot)

Expression and Regulation

Operons

• genes: [gene|660443DFA2D175758677E4F88A2CEEC3BB5A2399|yxjI]
  description: [Pubmed|9987136]

  sigma factors

  • [protein|580011DE5DC40EC9E7E0512791D328FAA010DCB8|SigB]: sigma factor, [Pubmed|15805528], in [regulon|580011DE5DC40EC9E7E0512791D328FAA010DCB8|SigB regulon]
  • [protein|3D974DD2967C7F8FD4E3C2AF42617B8AE9F0296D|SigW]: sigma factor, [Pubmed|9987136], in [regulon|3D974DD2967C7F8FD4E3C2AF42617B8AE9F0296D|SigW regulon]

  regulatory mechanism

  • [protein|D343D2096664A972026D911E7A17A35C7B1CD1C9|DegU]: repression, in [regulon|D343D2096664A972026D911E7A17A35C7B1CD1C9|DegU regulon]

  regulation

  • induced by stress ([protein|search|SigB]) [Pubmed|15805528]

• genes: [gene|F4C0A4050414B2FC9D6E571419D9537707DA4C05|yxjJ]-[gene|660443DFA2D175758677E4F88A2CEEC3BB5A2399|yxjI]
  description: [Pubmed|10746760]

  sigma factors

  • [protein|580011DE5DC40EC9E7E0512791D328FAA010DCB8|SigB]: sigma factor, [Pubmed|15805528], in [regulon|580011DE5DC40EC9E7E0512791D328FAA010DCB8|SigB regulon]

  regulatory mechanism

  • [protein|D343D2096664A972026D911E7A17A35C7B1CD1C9|DegU]: repression, in [regulon|D343D2096664A972026D911E7A17A35C7B1CD1C9|DegU regulon]

  regulation

  • induced by stress ([protein|search|SigB]) [Pubmed|15805528]

Biological materials

Mutant

• MGNA-B799 (yxjI::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1798 NBRP B. subtilis, Japan]
• BKE38940 ([gene|660443DFA2D175758677E4F88A2CEEC3BB5A2399|yxjI]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE38940 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTGCTGAAGTCTCCTTTG, downstream forward: _UP4_TAAAAAGCATTGACAATTGA
• BKK38940 ([gene|660443DFA2D175758677E4F88A2CEEC3BB5A2399|yxjI]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK38940 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTGCTGAAGTCTCCTTTG, downstream forward: _UP4_TAAAAAGCATTGACAATTGA

References

• 16672620,15805528